USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

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Searching in 'USC-OGP 2-DE database' for entry matching: P54727 USC-OGP 2-DE database:  P54727 P54727 General information about the entry View entry in simple text format Entry name RD23B_HUMAN Primary accession number P54727 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=UV excision repair protein RAD23 homolog B; Short=HR23B; Short=hHR23B; AltName: Full=XP-C repair-complementing complex 58 kDa protein; Short=p58;. Gene name Name=RAD23B Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein PLATELET_4-5 {PLATELET 4-5} Homo sapiens (Human)   map experimental info   PLATELET_4-5 MAP LOCATIONS: SPOT OGP-0048: pI=4.78; Mw=56395 UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1147: pI=4.85; Mw=55709 Cross-references UniProtKB/Swiss-Prot P54727; RD23B_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name RD23B_HUMAN Primary accession number P54727 Secondary accession number(s) B3KWK8 G5E9P0 Q7Z5K8 Q8WUB0 Sequence was last modified on  October 1, 1996 (version 1) Annotations were last modified on  March 15, 2017 (version 171) Name and origin of the protein Description RecName: Full=UV excision repair protein RAD23 homolog B; Short=HR23B; Short=hHR23B; AltName: Full=XP-C repair-complementing complex 58 kDa protein; Short=p58; Gene name Name=RAD23B Encoded on Name=RAD23B Keywords 3D-structure; Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; DNA damage; DNA repair; Nucleus; Phosphoprotein; Polymorphism; Proteasome; Reference proteome; Repeat; Ubl conjugation pathway. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL D21090; BAA04652.1; -; mRNA EMBL AY313777; AAP81008.1; -; mRNA EMBL AY165178; AAN47194.1; -; Genomic_DNA EMBL AK125226; BAG54170.1; -; mRNA EMBL AL137852; CAD13275.1; -; Genomic_DNA EMBL CH471105; EAW59016.1; -; Genomic_DNA EMBL CH471105; EAW59017.1; -; Genomic_DNA EMBL BC020973; AAH20973.1; -; mRNA CCDS CCDS59138.1; -. [P54727-2]; . CCDS CCDS6769.1; -. [P54727-1]; . PIR S44346; S44346; . RefSeq NP_001231653.1; NM_001244724.1. [P54727-2]; . RefSeq NP_002865.1; NM_002874.4. [P54727-1]; . UniGene Hs.521640; -; . PDB 1P1A; NMR; -; A=1-82 PDB 1PVE; NMR; -; A=275-342 PDB 1UEL; NMR; -; A=1-87 PDBsum 1P1A; -; . PDBsum 1PVE; -; . PDBsum 1UEL; -; . ProteinModelPortal P54727; -; . SMR P54727; -; . BioGrid 111824; 119; . DIP DIP-39944N; -; . IntAct P54727; 52; . MINT MINT-5006025; -; . STRING 9606.ENSP00000350708; -; . iPTMnet P54727; -; . PhosphoSitePlus P54727; -; . SwissPalm P54727; -; . BioMuta RAD23B; -; . DMDM 1709985; -; . OGP P54727; -; . EPD P54727; -; . MaxQB P54727; -; . PaxDb P54727; -; . PeptideAtlas P54727; -; . PRIDE P54727; -; . TopDownProteomics P54727-1; -. [P54727-1]; . DNASU 5887; -; . Ensembl ENST00000358015; ENSP00000350708; ENSG00000119318. [P54727-1]; . Ensembl ENST00000416373; ENSP00000405623; ENSG00000119318. [P54727-2]; . GeneID 5887; -; . KEGG hsa:5887; -; . UCSC uc004bde.4; human. [P54727-1]; . CTD 5887; -; . DisGeNET 5887; -; . GeneCards RAD23B; -; . HGNC HGNC:9813; RAD23B; . HPA CAB033868; -; . HPA HPA029718; -; . HPA HPA029720; -; . MIM 600062; gene; . neXtProt NX_P54727; -; . OpenTargets ENSG00000119318; -; . PharmGKB PA34173; -; . eggNOG KOG0011; Eukaryota; . eggNOG COG5272; LUCA; . GeneTree ENSGT00390000012078; -; . HOGENOM HOG000172162; -; . HOVERGEN HBG055042; -; . InParanoid P54727; -; . KO K10839; -; . OMA KXTSGDS; -; . OrthoDB EOG091G0DVL; -; . PhylomeDB P54727; -; . TreeFam TF101216; -; . Reactome R-HSA-532668; N-glycan trimming in the ER and Calnexin/Calreticulin cycle; . Reactome R-HSA-5689877; Josephin domain DUBs; . Reactome R-HSA-5696394; DNA Damage Recognition in GG-NER; . Reactome R-HSA-5696395; Formation of Incision Complex in GG-NER; . SIGNOR P54727; -; . ChiTaRS RAD23B; human; . EvolutionaryTrace P54727; -; . GeneWiki RAD23B; -; . GenomeRNAi 5887; -; . PMAP-CutDB P54727; -; . PRO PR:P54727; -; . Proteomes UP000005640; Chromosome 9; . Bgee ENSG00000119318; -; . CleanEx HS_RAD23B; -; . ExpressionAtlas P54727; baseline and differential; . Genevisible P54727; HS; . GO GO:0005829; C:cytosol; IDA:HPA; . GO GO:0005654; C:nucleoplasm; IDA:HPA; . GO GO:0005634; C:nucleus; TAS:ProtInc; . GO GO:0000502; C:proteasome complex; IEA:UniProtKB-KW; . GO GO:0071942; C:XPC complex; IDA:UniProtKB; . GO GO:0003684; F:damaged DNA binding; IEA:InterPro; . GO GO:0031593; F:polyubiquitin binding; IDA:UniProtKB; . GO GO:0003697; F:single-stranded DNA binding; TAS:ProtInc; . GO GO:0048568; P:embryonic organ development; IEA:Ensembl; . GO GO:0070911; P:global genome nucleotide-excision repair; TAS:Reactome; . GO GO:0006289; P:nucleotide-excision repair; IDA:UniProtKB; . GO GO:0000715; P:nucleotide-excision repair; DNA damage recognition; IDA:UniProtKB GO GO:0000717; P:nucleotide-excision repair; DNA duplex unwinding; TAS:Reactome GO GO:0006294; P:nucleotide-excision repair; preincision complex assembly; TAS:Reactome GO GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IEA:InterPro; . GO GO:0016579; P:protein deubiquitination; TAS:Reactome; . GO GO:0006457; P:protein folding; TAS:Reactome; . GO GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB; . GO GO:0007283; P:spermatogenesis; IEA:Ensembl; . Gene3D 1.10.10.540; -; 1; . InterPro IPR004806; Rad23; . InterPro IPR006636; STI1_HS-bd; . InterPro IPR015940; UBA; . InterPro IPR009060; UBA-like; . InterPro IPR029071; Ubiquitin-rel_dom; . InterPro IPR000626; Ubiquitin_dom; . InterPro IPR015360; XPC-bd; . Pfam PF00627; UBA; 2; . Pfam PF00240; ubiquitin; 1; . Pfam PF09280; XPC-binding; 1; . PRINTS PR01839; RAD23PROTEIN; . SMART SM00727; STI1; 1; . SMART SM00165; UBA; 2; . SMART SM00213; UBQ; 1; . SUPFAM SSF101238; SSF101238; 1; . SUPFAM SSF46934; SSF46934; 2; . SUPFAM SSF54236; SSF54236; 1; . TIGRFAMs TIGR00601; rad23; 1; . PROSITE PS50030; UBA; 2; . PROSITE PS50053; UBIQUITIN_2; 1; .

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